Create Merge Object Cluster and make UMAPS Calculate proportions Label main cell groups Label cell subtypes

Read in the processed data object with merged 4 populations

Check CD24 - fix sample name mix up

Now remove all the predictions and unnecessary clustering

First get a vector of the metadata

meta.to.remove <- meta.v[7:362]
meta.to.remove
  [1] "RNA_snn_res.0"                                                         
  [2] "RNA_snn_res.0.2"                                                       
  [3] "seurat_clusters"                                                       
  [4] "RNA_snn_res.1.2"                                                       
  [5] "percent.rb"                                                            
  [6] "pANN_0.25_0.09_110"                                                    
  [7] "DF.classifications_0.25_0.09_110"                                      
  [8] "predicted.id"                                                          
  [9] "prediction.score.RGa"                                                  
 [10] "prediction.score.Astrocytes.2"                                         
 [11] "prediction.score.Neurons.e"                                            
 [12] "prediction.score.Oligodendrocytes"                                     
 [13] "prediction.score.Neurons.DA"                                           
 [14] "prediction.score.Neural.Precursors"                                    
 [15] "prediction.score.Neurons.i"                                            
 [16] "prediction.score.Neurons"                                              
 [17] "prediction.score.Other"                                                
 [18] "prediction.score.Epithelial"                                           
 [19] "prediction.score.Astrocytes.1"                                         
 [20] "prediction.score.RGd1"                                                 
 [21] "prediction.score.RGd2"                                                 
 [22] "prediction.score.max"                                                  
 [23] "MBOAST23.pred"                                                         
 [24] "prediction.score.Neurons_mature"                                       
 [25] "prediction.score.Neurons_DA"                                           
 [26] "prediction.score.Neurons_early_inh"                                    
 [27] "prediction.score.RGd3"                                                 
 [28] "prediction.score.epithelial"                                           
 [29] "prediction.score.Neurons_early_inh2"                                   
 [30] "prediction.score.Neurons_DA_NPC"                                       
 [31] "prediction.score.Astrocytes2"                                          
 [32] "prediction.score.Astrocytes1"                                          
 [33] "prediction.score.oligo"                                                
 [34] "prediction.score.Neurons_early2"                                       
 [35] "prediction.score.OPC"                                                  
 [36] "prediction.score.Neurons_early"                                        
 [37] "prediction.score.NPC"                                                  
 [38] "prediction.score.Neurons_inh"                                          
 [39] "MBOAIW.pred"                                                           
 [40] "prediction.score.Dopaminergic.Neurons.early.2"                         
 [41] "prediction.score.Radial.Glia.1"                                        
 [42] "prediction.score.Dopaminergic.Neurons.early.1"                         
 [43] "prediction.score.Neural.Epithelial"                                    
 [44] "prediction.score.Astrocytes"                                           
 [45] "prediction.score.Dopaminergic.Neurons.1"                               
 [46] "prediction.score.Radial.Glia.2"                                        
 [47] "prediction.score.Dopaminergic.Neurons.2"                               
 [48] "prediction.score.Dopaminergic.Neurons.3"                               
 [49] "prediction.score.Dopaminergic.Neural.Precursors"                       
 [50] "AIW60.pred"                                                            
 [51] "RNA_snn_res.0.6"                                                       
 [52] "subgroups"                                                             
 [53] "prediction.score.Dividing_5"                                           
 [54] "prediction.score.Dividing_3"                                           
 [55] "prediction.score.Neuron_4"                                             
 [56] "prediction.score.Neuron_5"                                             
 [57] "prediction.score.Dividing_4"                                           
 [58] "prediction.score.Neuron_37"                                            
 [59] "prediction.score.RG_4"                                                 
 [60] "prediction.score.Dividing_2"                                           
 [61] "prediction.score.RG_45"                                                
 [62] "prediction.score.Astrocyte_5"                                          
 [63] "prediction.score.Endo_5"                                               
 [64] "prediction.score.Endo_15"                                              
 [65] "prediction.score.Endo_13"                                              
 [66] "prediction.score.Neuron_100"                                           
 [67] "prediction.score.Interneuron_24"                                       
 [68] "prediction.score.Interneuron_1"                                        
 [69] "prediction.score.GW14_Microglia_27"                                    
 [70] "prediction.score.Neuron_22"                                            
 [71] "prediction.score.Endo_7"                                               
 [72] "prediction.score.RG_1"                                                 
 [73] "prediction.score.Oligo_6"                                              
 [74] "prediction.score.Oligo_2"                                              
 [75] "prediction.score.Endo_4"                                               
 [76] "prediction.score.Neuron_2"                                             
 [77] "prediction.score.Astrocyte_4"                                          
 [78] "prediction.score.Oligo_11"                                             
 [79] "prediction.score.Endo_8"                                               
 [80] "prediction.score.Neuron_98"                                            
 [81] "prediction.score.Microglia_2"                                          
 [82] "prediction.score.RG_6"                                                 
 [83] "prediction.score.RG_7"                                                 
 [84] "prediction.score.RG_37"                                                
 [85] "prediction.score.Dividing_11"                                          
 [86] "prediction.score.Endo_11"                                              
 [87] "prediction.score.Microglia_8"                                          
 [88] "prediction.score.Oligo_8"                                              
 [89] "prediction.score.Microglia_10"                                         
 [90] "prediction.score.Dividing_42"                                          
 [91] "prediction.score.Interneuron_9"                                        
 [92] "Bha.mid.stri.pred"                                                     
 [93] "prediction.score.dividing"                                             
 [94] "prediction.score.neuron"                                               
 [95] "prediction.score.radial.glia"                                          
 [96] "prediction.score.astrocyte"                                            
 [97] "prediction.score.endothelial"                                          
 [98] "prediction.score.interneuron"                                          
 [99] "prediction.score.microglia"                                            
[100] "prediction.score.oligodendrocyte"                                      
[101] "Cell_Types"                                                            
[102] "pANN_0.25_0.09_773"                                                    
[103] "DF.classifications_0.25_0.09_773"                                      
[104] "number.groups"                                                         
[105] "cellsubgroups"                                                         
[106] "pANN_0.25_0.09_3000"                                                   
[107] "DF.classifications_0.25_0.09_3000"                                     
[108] "prediction.score.Astro_VIM_TNFSRF12A"                                  
[109] "prediction.score.Astro_GLYATL2"                                        
[110] "prediction.score.Astro_GUCY1A2"                                        
[111] "prediction.score.Astro_CYP4F12"                                        
[112] "prediction.score.Astro_GJB6_OXTR"                                      
[113] "prediction.score.Astro_GBP2_SPOCD1"                                    
[114] "prediction.score.Astro_SERPINA3"                                       
[115] "prediction.score.Astro_SIDT1"                                          
[116] "prediction.score.Ependyma_ZBBX"                                        
[117] "prediction.score.Astro_VIM_LHX2"                                       
[118] "astro.pred"                                                            
[119] "astro.pred.thresh"                                                     
[120] "tree.ident"                                                            
[121] "Cell_types"                                                            
[122] "prediction.score.RG_3"                                                 
[123] "prediction.score.RG_47"                                                
[124] "prediction.score.RG_8"                                                 
[125] "prediction.score.Interneuron_3"                                        
[126] "prediction.score.Dividing_13"                                          
[127] "prediction.score.Endo_6"                                               
[128] "prediction.score.GW17_Vascular_14"                                     
[129] "prediction.score.Dividing_7"                                           
[130] "prediction.score.Dividing_48"                                          
[131] "prediction.score.Endo_16"                                              
[132] "prediction.score.RG_46"                                                
[133] "prediction.score.RG_15"                                                
[134] "prediction.score.Neuron_27"                                            
[135] "prediction.score.RG_13"                                                
[136] "prediction.score.Neuron_24"                                            
[137] "prediction.score.Neuron_53"                                            
[138] "prediction.score.Dividing_18"                                          
[139] "prediction.score.GW17_Vascular_21"                                     
[140] "prediction.score.Neuron_26"                                            
[141] "prediction.score.Neuron_102"                                           
[142] "prediction.score.Neuron_10"                                            
[143] "prediction.score.Neuron_36"                                            
[144] "prediction.score.Dividing_12"                                          
[145] "prediction.score.Interneuron_7"                                        
[146] "prediction.score.Dividing_15"                                          
[147] "prediction.score.RG_22"                                                
[148] "prediction.score.Dividing_6"                                           
[149] "prediction.score.RG_11"                                                
[150] "prediction.score.Microglia_3"                                          
[151] "prediction.score.Interneuron_43"                                       
[152] "prediction.score.Dividing_9"                                           
[153] "prediction.score.GW18_Astrocyte_17"                                    
[154] "prediction.score.Neuron_15"                                            
[155] "prediction.score.IPC_18"                                               
[156] "prediction.score.Neuron_101"                                           
[157] "prediction.score.Neuron_18"                                            
[158] "prediction.score.Interneuron_5"                                        
[159] "prediction.score.Neuron_16"                                            
[160] "prediction.score.Neuron_72"                                            
[161] "prediction.score.RG_2"                                                 
[162] "prediction.score.Neuron_13"                                            
[163] "prediction.score.Neuron_12"                                            
[164] "prediction.score.GW18_Astrocyte_26"                                    
[165] "prediction.score.Oligo_12"                                             
[166] "prediction.score.Neuron_29"                                            
[167] "prediction.score.GW18_Astrocyte_51"                                    
[168] "prediction.score.Oligo_9"                                              
[169] "prediction.score.Neuron_3"                                             
[170] "prediction.score.Oligo_7"                                              
[171] "prediction.score.Endo_10"                                              
[172] "prediction.score.Neuron_33"                                            
[173] "prediction.score.Dividing_1"                                           
[174] "prediction.score.Astrocyte_2"                                          
[175] "prediction.score.RG_52"                                                
[176] "prediction.score.Neuron_92"                                            
[177] "prediction.score.Neuron_31"                                            
[178] "prediction.score.IPC_34"                                               
[179] "prediction.score.RG_10"                                                
[180] "prediction.score.Dividing_21"                                          
[181] "prediction.score.Neuron_32"                                            
[182] "prediction.score.Neuron_34"                                            
[183] "prediction.score.Endo_9"                                               
[184] "prediction.score.GW18_2_45Oligo"                                       
[185] "prediction.score.Neuron_28"                                            
[186] "prediction.score.Interneuron_6"                                        
[187] "prediction.score.Endo_1"                                               
[188] "prediction.score.GW18_2_42Neuron"                                      
[189] "prediction.score.Astrocyte_1"                                          
[190] "prediction.score.Microglia_6"                                          
[191] "prediction.score.Neuron_93"                                            
[192] "prediction.score.Neuron_39"                                            
[193] "prediction.score.Dividing_10"                                          
[194] "prediction.score.Neuron_6"                                             
[195] "prediction.score.Neuron_35"                                            
[196] "prediction.score.RG_12"                                                
[197] "prediction.score.Dividing_14"                                          
[198] "prediction.score.IPC_29"                                               
[199] "prediction.score.Neuron_19"                                            
[200] "prediction.score.GW19_Dividing_39"                                     
[201] "prediction.score.Interneuron_4"                                        
[202] "prediction.score.GW19_Astrocyte_35"                                    
[203] "prediction.score.RG_17"                                                
[204] "prediction.score.Microglia_5"                                          
[205] "prediction.score.Endo_12"                                              
[206] "prediction.score.RG_59"                                                
[207] "prediction.score.Neuron_50"                                            
[208] "prediction.score.Neuron_1"                                             
[209] "prediction.score.Neuron_17"                                            
[210] "prediction.score.GW19_Astrocyte_53"                                    
[211] "prediction.score.Neuron_11"                                            
[212] "prediction.score.GW19_2_45Outlier"                                     
[213] "prediction.score.Endo_14"                                              
[214] "prediction.score.Microglia_4"                                          
[215] "prediction.score.Oligo_4"                                              
[216] "prediction.score.Oligo_1"                                              
[217] "prediction.score.GW19_2_29Neuron"                                      
[218] "prediction.score.GW19_2_30RG"                                          
[219] "prediction.score.Endo_34"                                              
[220] "prediction.score.Interneuron_31"                                       
[221] "prediction.score.Oligo_3"                                              
[222] "prediction.score.Neuron_8"                                             
[223] "prediction.score.RG_50"                                                
[224] "prediction.score.Neuron_21"                                            
[225] "prediction.score.Interneuron_10"                                       
[226] "prediction.score.GW20_Interneuron_32"                                  
[227] "prediction.score.GW20_Interneuron_34"                                  
[228] "prediction.score.GW20_Astrocyte_39"                                    
[229] "prediction.score.Interneuron_2"                                        
[230] "prediction.score.Astrocyte_6"                                          
[231] "prediction.score.Neuron_7"                                             
[232] "prediction.score.Microglia_15"                                         
[233] "prediction.score.Endo_3"                                               
[234] "prediction.score.Interneuron_8"                                        
[235] "prediction.score.Astrocyte_3"                                          
[236] "prediction.score.RG_9"                                                 
[237] "prediction.score.Neuron_68"                                            
[238] "prediction.score.GW22both_RG_38"                                       
[239] "prediction.score.RG_5"                                                 
[240] "prediction.score.GW22both_RG_23"                                       
[241] "prediction.score.Microglia_16"                                         
[242] "prediction.score.Microglia_1"                                          
[243] "prediction.score.Oligo_5"                                              
[244] "prediction.score.Dividing_41"                                          
[245] "prediction.score.Endo_2"                                               
[246] "prediction.score.Microglia_76"                                         
[247] "prediction.score.Endo_26"                                              
[248] "prediction.score.Neuron_20"                                            
[249] "prediction.score.Neuron_63"                                            
[250] "prediction.score.Neuron_64"                                            
[251] "prediction.score.intermediate.progenitor.cell"                         
[252] "prediction.score.outlier"                                              
[253] "Bha"                                                                   
[254] "pANN_0.25_0.09_604"                                                    
[255] "DF.classifications_0.25_0.09_604"                                      
[256] "MBOAST23.thresh"                                                       
[257] "AIW120.pred"                                                           
[258] "AIW120.thresh"                                                         
[259] "AIW60.thresh"                                                          
[260] "prediction.score.CALB1_PPP1R17"                                        
[261] "prediction.score.SOX6_AGTR1"                                           
[262] "prediction.score.SOX6_GFRA2"                                           
[263] "prediction.score.SOX6_DDT"                                             
[264] "prediction.score.CALB1_RBP4"                                           
[265] "prediction.score.CALB1_CALCR"                                          
[266] "prediction.score.SOX6_PART1"                                           
[267] "prediction.score.CALB1_GEM"                                            
[268] "prediction.score.CALB1_TRHR"                                           
[269] "prediction.score.CALB1_CRYM_CCDC68"                                    
[270] "da.pred"                                                               
[271] "da.pred.thresh"                                                        
[272] "prediction.score.Glyc"                                                 
[273] "prediction.score.tRG"                                                  
[274] "prediction.score.RG.div1"                                              
[275] "prediction.score.nEN.early2"                                           
[276] "prediction.score.nEN.late"                                             
[277] "prediction.score.EN.V1.2"                                              
[278] "prediction.score.vRG"                                                  
[279] "prediction.score.RG.div2"                                              
[280] "prediction.score.IN.CTX.CGE1"                                          
[281] "prediction.score.IN.CTX.CGE2"                                          
[282] "prediction.score.IPC.div2"                                             
[283] "prediction.score.oRG"                                                  
[284] "prediction.score.IPC.nEN1"                                             
[285] "prediction.score.IPC.div1"                                             
[286] "prediction.score.IN.CTX.MGE2"                                          
[287] "prediction.score.Mural"                                                
[288] "prediction.score.IPC.nEN3"                                             
[289] "prediction.score.IN.CTX.MGE1"                                          
[290] "prediction.score.IPC.nEN2"                                             
[291] "prediction.score.EN.V1.3"                                              
[292] "prediction.score.IN.STR"                                               
[293] "prediction.score.V23"                                                  
[294] "prediction.score.EN.PFC3"                                              
[295] "prediction.score.MGE.RG2"                                              
[296] "prediction.score.nIN5"                                                 
[297] "prediction.score.MGE.IPC3"                                             
[298] "prediction.score.nIN4"                                                 
[299] "prediction.score.MGE.IPC1"                                             
[300] "prediction.score.MGE.RG1"                                              
[301] "prediction.score.MGE.div"                                              
[302] "prediction.score.MGE.IPC2"                                             
[303] "prediction.score.nIN2"                                                 
[304] "prediction.score.Astrocyte"                                            
[305] "prediction.score.nIN1"                                                 
[306] "prediction.score.EN.V1.1"                                              
[307] "prediction.score.nIN3"                                                 
[308] "prediction.score.EN.PFC1"                                              
[309] "prediction.score.nEN.early1"                                           
[310] "prediction.score.EN.PFC2"                                              
[311] "prediction.score.RG.early"                                             
[312] "prediction.score.Endothelial"                                          
[313] "prediction.score.Microglia"                                            
[314] "prediction.score.Choroid"                                              
[315] "prediction.score.U1"                                                   
[316] "prediction.score.U2"                                                   
[317] "prediction.score.U4"                                                   
[318] "prediction.score.U3"                                                   
[319] "dev.cortex.pred"                                                       
[320] "dev.cortex.pred.thresh"                                                
[321] "dev.cortex.pred.thresh2"                                               
[322] "prediction.score.EarlyExcitatory"                                      
[323] "prediction.score.RadialGlia"                                           
[324] "prediction.score.Glioblast"                                            
[325] "prediction.score.EarlyInhibitory"                                      
[326] "prediction.score.NeuralProgenitor"                                     
[327] "prediction.score.30"                                                   
[328] "prediction.score.29"                                                   
[329] "prediction.score.VLMC"                                                 
[330] "prediction.score.31"                                                   
[331] "fb.pred"                                                               
[332] "fb.thresh"                                                             
[333] "prediction.score.Neuroblast.motorneuron.GABAergic."                    
[334] "prediction.score.Radial.Glia.cycling"                                  
[335] "prediction.score.Cortical.Interneurons"                                
[336] "prediction.score.Excitatory.neurons.midbrain"                          
[337] "prediction.score.Excitatory.neurons.possibly.midbrain"                 
[338] "prediction.score.OPCs"                                                 
[339] "prediction.score.Excitatory.neurons.cortex"                            
[340] "prediction.score.Forebrain.early.neuroblast.possibly.GABAergic"        
[341] "prediction.score.GABAergic.forebrain"                                  
[342] "prediction.score.Cortical.Pyramidal"                                   
[343] "prediction.score.Radial.Glia"                                          
[344] "prediction.score.Radial.Glia.potential.glioblast"                      
[345] "prediction.score.Radial.Glia.VLMC.primed."                             
[346] "prediction.score.Glioblast.Pre.OPC"                                    
[347] "prediction.score.Forebrain.neural.progenitor.EMX1"                     
[348] "prediction.score.Striatum.Cortical.neurons"                            
[349] "prediction.score.Radial.glia.Glioblast.Forebrain.progenitor.EMX1"      
[350] "prediction.score.Forebrain.inhibitory.neuroblast"                      
[351] "prediction.score.VLMCs"                                                
[352] "prediction.score.Inhibitory.neurons.Midbrain..possibly.GABAergic"      
[353] "prediction.score.Hindbrain.neuroblast"                                 
[354] "prediction.score.Radial.Glia.Glioblast"                                
[355] "prediction.score.GABAergic.or.interneuron.neuroblast.probably.midbrain"
[356] "prediction.score.Midbrain.inhibitory.neuroblast"                       

Add the subtype labels

# First rename cell subgroup cluster lables
Idents(seu.L) <- 'Level3'

cluster.ids <- c("Astro1","Neurons1","RG1","Astro2","Neurons2",
                 "Astro3","Astro4","Neurons3","RG2","Neurons4",
                 "Astro5","Neurons5","RG3","DANeurons1","Neurons6",
                 "Mix","RG4","NPC","Neurons7","DANeurons2",
                 "DANeurons3","RG5","RG6","RG7","RG8"
                 )

# note Neurons8-inh-max is now Neurons 7
# Endothelial NPC is now NPC
# RG6-epi is nw RG6
# RG-OPC is now RG8

# change 'Levels' to 'Level1' main cell types
# keep these as 'Level2'
# later remove 'Level3' - same level just different labels

names(cluster.ids) <- levels(seu.L)
seu.L <- RenameIdents(seu.L, cluster.ids)
seu.L$Level2 <- Idents(seu.L)

DimPlot(seu.L, group.by = 'Level2')

Now look at the previous workbook to make the subgroup labels

  1. Astrocytes: after FindAllMarkers groups were overlapping in markers. Confirmed with direct marker comparisons, no clear distinction exists. Merge: Astro1 and Astro2 Merge: Astro 3 and Astro 4 Astro5 remains distinct.

Idents(seu.L) <- 'Level2'

cluster.ids <- c("Astrocytes1","Neurons1","RG1","Astrocytes1","Neurons2",
                 "Astrocytes2","Astrocytes2","Neurons3","RG2","Neurons4",
                 "Astrocytes3","Neurons5","RG3","DANeurons1","Neurons6",
                 "Mix","RG4","NPC","Neurons7","DANeurons2",
                 "DANeurons3","RG5","RG6","RG7","RG8"
                 )

# note Neurons8-inh-max is now Neurons 7
# Endothelial NPC is now NPC
# RG6-epi is nw RG6
# RG-OPC is now RG8

# change 'Levels' to 'Level1' main cell types
# keep these as 'Level2'
# later remove 'Level3' - same level just different labels
# merge but unmarkered should be Subtypes then I can make Subtype_markers

names(cluster.ids) <- levels(seu.L)
seu.L <- RenameIdents(seu.L, cluster.ids)
seu.L$Cell_Subtypes <- Idents(seu.L)

DimPlot(seu.L, group.by = 'Cell_Subtypes')

NA
NA
NA
NA
NA

Now look at the astrocyte subgroup group markers


DotPlot(sub.astro, features = c("HPD","COL3A1","DCN"), group.by = 'Cell_Subtypes') + RotatedAxis()
Warning: Scaling data with a low number of groups may produce misleading results

DotPlot(seu.L, features = c("HPD","COL3A1","DCN"), group.by = 'Cell_Subtypes') + RotatedAxis()

Double check for other markers

Idents(sub.astro) <- 'Cell_Subtypes'
astro.markers <- FindAllMarkers(sub.astro, logfc.threshold = 0.5, only.pos = TRUE, test.use = "MAST")
Calculating cluster Astrocytes1

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

Done!
Calculating cluster Astrocytes2

 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Astrocytes3

 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!

Plot possible markers


DotPlot(sub.astro, features = genes) +RotatedAxis()
Warning: Scaling data with a low number of groups may produce misleading results

DotPlot(seu.L, features = genes, group.by = 'Cell_Subtypes') +RotatedAxis()

DimPlot(sub.astro)

FeaturePlot(sub.astro, features = genes)

Label with the subtype markers

Idents(seu.L) <- 'Level3'

cluster.ids <- c("Astrocytes-HPD","Neurons1","RG1","Astrocytes-HPD","Neurons2",
                 "Astrocytes-COL3A1","Astrocytes-COL3A1","Neurons3","RG2","Neurons4",
                 "Astrocytes-FABP5","Neurons5","RG3","DANeurons1","Neurons6",
                 "Mix","RG4","NPC","Neurons7","DANeurons2",
                 "DANeurons3","RG5","RG6","RG7","RG8"
                 )

names(cluster.ids) <- levels(seu.L)
seu.L <- RenameIdents(seu.L, cluster.ids)
seu.L$Cell_Subtype_Markers <- Idents(seu.L)

DimPlot(seu.L, group.by = 'Cell_Subtype_Markers')

Check neuron subgroup markers and annotate

Idents(seu.L) <- 'Cell_Subtypes'
sub.da <- subset(seu.L, idents = c("DANeurons1","DANeurons2","DANeurons3"))
DotPlot(sub.da, features = n.markers) + RotatedAxis()
Warning: Scaling data with a low number of groups may produce misleading results

FeaturePlot(sub.da, features = n.markers)

DimPlot(sub.da)



Idents(seu.L) <- 'Cell_Subtypes'
sub.n <- subset(seu.L, idents = c("Neurons1","Neurons2","Neurons3",
                                  "Neurons4","Neurons5","Neurons6","Neurons7"))
DotPlot(sub.n, features = n.markers) + RotatedAxis()

FeaturePlot(sub.n, features = n.markers )

DimPlot(sub.n)

Repeat cluster markers


neur.markers <- FindAllMarkers(sub.n, logfc.threshold = 0.5, only.pos = TRUE, test.use = "MAST")
Calculating cluster Neurons1

 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Neurons2

 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Neurons3

 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Neurons4

 Completed [=>----------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   6% with 0 failures
 Completed [====>-------------------------------------------------------]   8% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Neurons5

 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Neurons6

 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Neurons7

 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
da.markers <- FindAllMarkers(sub.da, logfc.threshold = 0.5, only.pos = TRUE, test.use = "MAST")
Calculating cluster DANeurons1

 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster DANeurons2

 Completed [====>-------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster DANeurons3

 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
all.n.markers <- FindAllMarkers(sub.neur, logfc.threshold = 0.5, only.pos = TRUE, test.use = "MAST")
Calculating cluster Neurons1

 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Neurons2

 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Neurons3

 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Neurons4

 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [=====================================>----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [=====================================>----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Neurons5

 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [=====================================>----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [=====================================>----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster DANeurons1

 Completed [=>----------------------------------------------------------]   3% with 0 failures
 Completed [=>----------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   5% with 0 failures
 Completed [==>---------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   7% with 0 failures
 Completed [====>-------------------------------------------------------]   8% with 0 failures
 Completed [====>-------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=>----------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   5% with 0 failures
 Completed [==>---------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   7% with 0 failures
 Completed [====>-------------------------------------------------------]   8% with 0 failures
 Completed [====>-------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Neurons6

 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster Neurons7

 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster DANeurons2

 Completed [====>-------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster DANeurons3

 Completed [=>----------------------------------------------------------]   3% with 0 failures
 Completed [=>----------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   5% with 0 failures
 Completed [==>---------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   7% with 0 failures
 Completed [====>-------------------------------------------------------]   8% with 0 failures
 Completed [====>-------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=>----------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   5% with 0 failures
 Completed [==>---------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   7% with 0 failures
 Completed [====>-------------------------------------------------------]   8% with 0 failures
 Completed [====>-------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!

Look at the markers in all markers

Rename the neurons with Subtype markers

Now get subtype markers for RG

RG1 - ventral (doesn’t have positive markers) RG2 -

Merge 2 and 4 then get markers again After merging 2 and 4 the new 4 previously 5 also seems the same


Idents(seu.L) <- 'Level3'
DimPlot(seu.L)


cluster.ids <- c("Astrocytes1","Neurons1","RadialGlia1","Astrocytes1","Neurons2",
                 "Astrocytes2","Astrocytes2","Neurons3","RadialGlia2","Neurons4",
                 "Astrocytes3","Neurons5","RadialGlia3","DANeurons1","Neurons6",
                 "Mix","RadialGlia2","NPC","Neurons7","DANeurons2",
                 "DANeurons3","RadialGlia2","RadialGlia4","RadialGlia5","RadialGlia6"
                 )

# merge RG2 and 4
# new = previous
# RG1 = "RadialGlia1
# RG2 = RG2
# RG3 = RG3
# RG 4 = RG5
# RG 5 = RG6
# RG6 = RG7
# RG7=RG8

# merge 2 4 and 5

names(cluster.ids) <- levels(seu.L)
seu.L <- RenameIdents(seu.L, cluster.ids)
seu.L$Cell_Subtypes <- Idents(seu.L)

DimPlot(seu.L, group.by = 'Cell_Subtypes')

Calculate new markers


rg.markers <- FindAllMarkers(sub.rg, logfc.threshold = 0.5, only.pos = TRUE, test.use = "MAST")
Calculating cluster RadialGlia1

 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster RadialGlia2

 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster RadialGlia3

 Completed [=>----------------------------------------------------------]   3% with 0 failures
 Completed [=>----------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   5% with 0 failures
 Completed [==>---------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   7% with 0 failures
 Completed [====>-------------------------------------------------------]   8% with 0 failures
 Completed [====>-------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=>----------------------------------------------------------]   3% with 0 failures
 Completed [=>----------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   5% with 0 failures
 Completed [==>---------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   7% with 0 failures
 Completed [====>-------------------------------------------------------]   8% with 0 failures
 Completed [====>-------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster RadialGlia4

 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster RadialGlia5

 Completed [==>---------------------------------------------------------]   5% with 0 failures
 Completed [==>---------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   7% with 0 failures
 Completed [====>-------------------------------------------------------]   8% with 0 failures
 Completed [====>-------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [===>--------------------------------------------------------]   7% with 0 failures
 Completed [====>-------------------------------------------------------]   8% with 0 failures
 Completed [====>-------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Calculating cluster RadialGlia6

 Completed [=>----------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   5% with 0 failures
 Completed [==>---------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   7% with 0 failures
 Completed [====>-------------------------------------------------------]   8% with 0 failures
 Completed [====>-------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [=====================>--------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [===================================================>--------]  88% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!
Combining coefficients and standard errors
Calculating log-fold changes
Calculating likelihood ratio tests
Refitting on reduced model...

 Completed [=>----------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   4% with 0 failures
 Completed [==>---------------------------------------------------------]   5% with 0 failures
 Completed [==>---------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   6% with 0 failures
 Completed [===>--------------------------------------------------------]   7% with 0 failures
 Completed [====>-------------------------------------------------------]   8% with 0 failures
 Completed [====>-------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]   9% with 0 failures
 Completed [=====>------------------------------------------------------]  10% with 0 failures
 Completed [=====>------------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  11% with 0 failures
 Completed [======>-----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  12% with 0 failures
 Completed [=======>----------------------------------------------------]  13% with 0 failures
 Completed [=======>----------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  14% with 0 failures
 Completed [========>---------------------------------------------------]  15% with 0 failures
 Completed [========>---------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  16% with 0 failures
 Completed [=========>--------------------------------------------------]  17% with 0 failures
 Completed [==========>-------------------------------------------------]  18% with 0 failures
 Completed [==========>-------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  19% with 0 failures
 Completed [===========>------------------------------------------------]  20% with 0 failures
 Completed [===========>------------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  21% with 0 failures
 Completed [============>-----------------------------------------------]  22% with 0 failures
 Completed [=============>----------------------------------------------]  23% with 0 failures
 Completed [=============>----------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  24% with 0 failures
 Completed [==============>---------------------------------------------]  25% with 0 failures
 Completed [==============>---------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  26% with 0 failures
 Completed [===============>--------------------------------------------]  27% with 0 failures
 Completed [================>-------------------------------------------]  28% with 0 failures
 Completed [================>-------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  29% with 0 failures
 Completed [=================>------------------------------------------]  30% with 0 failures
 Completed [=================>------------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  31% with 0 failures
 Completed [==================>-----------------------------------------]  32% with 0 failures
 Completed [===================>----------------------------------------]  33% with 0 failures
 Completed [===================>----------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  34% with 0 failures
 Completed [====================>---------------------------------------]  35% with 0 failures
 Completed [====================>---------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  36% with 0 failures
 Completed [=====================>--------------------------------------]  37% with 0 failures
 Completed [=====================>--------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  38% with 0 failures
 Completed [======================>-------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  39% with 0 failures
 Completed [=======================>------------------------------------]  40% with 0 failures
 Completed [=======================>------------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  41% with 0 failures
 Completed [========================>-----------------------------------]  42% with 0 failures
 Completed [=========================>----------------------------------]  43% with 0 failures
 Completed [=========================>----------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  44% with 0 failures
 Completed [==========================>---------------------------------]  45% with 0 failures
 Completed [==========================>---------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  46% with 0 failures
 Completed [===========================>--------------------------------]  47% with 0 failures
 Completed [============================>-------------------------------]  48% with 0 failures
 Completed [============================>-------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  49% with 0 failures
 Completed [=============================>------------------------------]  50% with 0 failures
 Completed [=============================>------------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  51% with 0 failures
 Completed [==============================>-----------------------------]  52% with 0 failures
 Completed [===============================>----------------------------]  53% with 0 failures
 Completed [===============================>----------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  54% with 0 failures
 Completed [================================>---------------------------]  55% with 0 failures
 Completed [================================>---------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  56% with 0 failures
 Completed [=================================>--------------------------]  57% with 0 failures
 Completed [==================================>-------------------------]  58% with 0 failures
 Completed [==================================>-------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  59% with 0 failures
 Completed [===================================>------------------------]  60% with 0 failures
 Completed [===================================>------------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  61% with 0 failures
 Completed [====================================>-----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  62% with 0 failures
 Completed [=====================================>----------------------]  63% with 0 failures
 Completed [=====================================>----------------------]  64% with 0 failures
 Completed [======================================>---------------------]  64% with 0 failures
 Completed [======================================>---------------------]  65% with 0 failures
 Completed [======================================>---------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  66% with 0 failures
 Completed [=======================================>--------------------]  67% with 0 failures
 Completed [========================================>-------------------]  68% with 0 failures
 Completed [========================================>-------------------]  69% with 0 failures
 Completed [=========================================>------------------]  69% with 0 failures
 Completed [=========================================>------------------]  70% with 0 failures
 Completed [=========================================>------------------]  71% with 0 failures
 Completed [==========================================>-----------------]  71% with 0 failures
 Completed [==========================================>-----------------]  72% with 0 failures
 Completed [===========================================>----------------]  73% with 0 failures
 Completed [===========================================>----------------]  74% with 0 failures
 Completed [============================================>---------------]  74% with 0 failures
 Completed [============================================>---------------]  75% with 0 failures
 Completed [============================================>---------------]  76% with 0 failures
 Completed [=============================================>--------------]  76% with 0 failures
 Completed [=============================================>--------------]  77% with 0 failures
 Completed [==============================================>-------------]  78% with 0 failures
 Completed [==============================================>-------------]  79% with 0 failures
 Completed [===============================================>------------]  79% with 0 failures
 Completed [===============================================>------------]  80% with 0 failures
 Completed [===============================================>------------]  81% with 0 failures
 Completed [================================================>-----------]  81% with 0 failures
 Completed [================================================>-----------]  82% with 0 failures
 Completed [=================================================>----------]  83% with 0 failures
 Completed [=================================================>----------]  84% with 0 failures
 Completed [==================================================>---------]  84% with 0 failures
 Completed [==================================================>---------]  85% with 0 failures
 Completed [==================================================>---------]  86% with 0 failures
 Completed [===================================================>--------]  86% with 0 failures
 Completed [===================================================>--------]  87% with 0 failures
 Completed [===================================================>--------]  88% with 0 failures
 Completed [====================================================>-------]  88% with 0 failures
 Completed [====================================================>-------]  89% with 0 failures
 Completed [=====================================================>------]  89% with 0 failures
 Completed [=====================================================>------]  90% with 0 failures
 Completed [=====================================================>------]  91% with 0 failures
 Completed [======================================================>-----]  91% with 0 failures
 Completed [======================================================>-----]  92% with 0 failures
 Completed [=======================================================>----]  93% with 0 failures
 Completed [=======================================================>----]  94% with 0 failures
 Completed [========================================================>---]  94% with 0 failures
 Completed [========================================================>---]  95% with 0 failures
 Completed [========================================================>---]  96% with 0 failures
 Completed [=========================================================>--]  96% with 0 failures
 Completed [=========================================================>--]  97% with 0 failures
 Completed [==========================================================>-]  98% with 0 failures
 Completed [==========================================================>-]  99% with 0 failures
 Completed [===========================================================>]  99% with 0 failures
 Completed [===========================================================>] 100% with 0 failures
 Completed [============================================================] 100% with 0 failures
                                                                                              

Done!

Look at the markers

Check markers


# remember RG1 has no markers
rg <- c("RPL41","PTN","NEAT1","CYP1B1","TOP2A","VCAN")
DotPlot(sub.rg, features = rg) + RotatedAxis()

DotPlot(seu.L, features = rg) + RotatedAxis()

NA
NA

Add the RG cell subtype markers

Remember 2,4 and 5 are merged

Save the new data object


saveRDS(seu.L, paste(pathway, "CombinedLabeledMarkers14102022.RDS"))

Clean up labels


colnames(seu.L@meta.data)
 [1] "orig.ident"           "nCount_RNA"           "nFeature_RNA"         "nCount_HTO"          
 [5] "nFeature_HTO"         "percent.mt"           "Level3"               "Levels"              
 [9] "Cell_Types"           "Level2"               "Cell_Subtypes"        "Cell_Subtype_Markers"
print("Cell_Subtype_Markers")
[1] "Cell_Subtype_Markers"
unique(seu.L$Cell_Subtype_Markers)
 [1] Neurons-GRIA2     NPC               Neurons-SPARCL1   DANeurons-TPBG    Neurons-CP       
 [6] DANeurons-RAB3B   DANeurons-TTR     RadialGlia-CY1B1  RadialGlia-RPL41  RadialGlia-PTN   
[11] Astrocytes-FABP5  Astrocytes-HPD    RadialGlia-TOP2A  Mix               Neurons-TPH1     
[16] Neurons-TFPI1     Neurons-ASCL1     RadialGlia-NEAT1  RadialGlia-VCAN   Neurons-MGP      
[21] Astrocytes-COL3A1
21 Levels: Astrocytes-HPD Neurons-ASCL1 RadialGlia-RPL41 Neurons-SPARCL1 ... RadialGlia-VCAN
print("Cell_Subtypes")
[1] "Cell_Subtypes"
unique(seu.L$Cell_Subtypes)
 [1] Neurons6    NPC         Neurons2    DANeurons2  Neurons4    DANeurons1  DANeurons3 
 [8] RadialGlia4 RadialGlia1 RadialGlia2 Astrocytes3 Astrocytes1 RadialGlia5 Mix        
[15] Neurons7    Neurons3    Neurons1    RadialGlia3 RadialGlia6 Neurons5    Astrocytes2
21 Levels: Astrocytes1 Neurons1 RadialGlia1 Neurons2 Astrocytes2 Neurons3 ... RadialGlia6
print("Cell_Types")
[1] "Cell_Types"
unique(seu.L$Cell_Types)
[1] "Neurons"     "Endothelial" "Radial Glia" "Glia"        "NPC"         "Astrocytes" 
[7] "Other"      

meta <- colnames(seu.L@meta.data)

meta.to.remove <- c("Level3", "Levels", "Level2")


for(i in meta.to.remove) {
  seu.L[[i]] <- NULL
}

colnames(seu.L@meta.data)
[1] "orig.ident"           "nCount_RNA"           "nFeature_RNA"         "nCount_HTO"          
[5] "nFeature_HTO"         "percent.mt"           "Cell_Types"           "Cell_Subtypes"       
[9] "Cell_Subtype_Markers"
---
title: "R Notebook"
output: html_notebook
---

Create Merge Object
Cluster and make UMAPS
Calculate proportions
Label main cell groups
Label cell subtypes 


```{r}

library(Seurat)
library(dplyr)
library('reshape')
library("ggplot2")


```


Read in the processed data object with merged 4 populations

```{r}

pathway <- "/Users/rhalenathomas/Documents/Data/scRNAseq/PhenoID/scRNAseqSorted/objs/"

seu.L <- readRDS(paste(pathway, "Merge4PopsLabels.RDS", sep = ""))



```

Check CD24 - fix sample name mix up

```{r}

FeaturePlot(seu.L, features = "CD24", split.by = 'orig.ident')

# rename
Idents(seu.L) <- 'orig.ident'
cluster.ids <- c("Neurons2", "Neurons1", "Astrocytes","RadialGlia"
                 )


names(cluster.ids) <- levels(seu.L)
seu.L <- RenameIdents(seu.L, cluster.ids)
seu.L$orig.ident <- Idents(seu.L)

FeaturePlot(seu.L, features = "CD24", split.by = 'orig.ident')
DimPlot(seu.L)

### not the mix up is fixed


```


Now remove all the predictions and unnecessary clustering


First get a vector of the metadata

```{r}

meta.v <- colnames(seu.L@meta.data)
length(meta.v)  # is 374
# starting data
print("start")
meta.v[1:10]
# I'll want to keep many items
# keep 1-6

# end data
print("end")
meta.v[370:374]

meta.to.remove <- meta.v[7:374]
# need to keep cell types 101 - or put it back
# 363 has more labels 

# make a new clean object and add back the CellTypes 
seu <- seu.L

meta.to.remove <- meta.v[7:362]
meta.to.remove

```



```{r}
# remove all the extra metadata

for(i in meta.to.remove) {
  seu.L[[i]] <- NULL
}

# still some extra metadata

meta.v2 <- colnames(seu.L@meta.data)
meta.v2

meta.to.remove <- meta.v2[7:12]

for(i in meta.to.remove) {
  seu.L[[i]] <- NULL
}

meta.v3 <- colnames(seu.L@meta.data)

meta.to.remove <- meta.v3[7:10]

for(i in meta.to.remove) {
  seu.L[[i]] <- NULL
}

DimPlot(seu.L, group.by = 'Levels')


seu.L <- AddMetaData(seu.L, seu$Cell_Types, col.name = "Cell_Types")

DimPlot(seu.L, group.by = 'Cell_Types')


# save cleaned up object

saveRDS(seu.L, paste(pathway, "Merge4popCleanLabels.RDS", sep = ""))

DimPlot(seu.L, group.by = 'Level3', label = TRUE)


```


Add the subtype labels



```{r}
# First rename cell subgroup cluster lables
Idents(seu.L) <- 'Level3'

cluster.ids <- c("Astro1","Neurons1","RG1","Astro2","Neurons2",
                 "Astro3","Astro4","Neurons3","RG2","Neurons4",
                 "Astro5","Neurons5","RG3","DANeurons1","Neurons6",
                 "Mix","RG4","NPC","Neurons7","DANeurons2",
                 "DANeurons3","RG5","RG6","RG7","RG8"
                 )

# note Neurons8-inh-max is now Neurons 7
# Endothelial NPC is now NPC
# RG6-epi is nw RG6
# RG-OPC is now RG8

# change 'Levels' to 'Level1' main cell types
# keep these as 'Level2'
# later remove 'Level3' - same level just different labels

names(cluster.ids) <- levels(seu.L)
seu.L <- RenameIdents(seu.L, cluster.ids)
seu.L$Level2 <- Idents(seu.L)

DimPlot(seu.L, group.by = 'Level2')

```

Now look at the previous workbook to make the subgroup labels

1. Astrocytes: after FindAllMarkers groups were overlapping in markers.  Confirmed with direct marker comparisons, no clear distinction exists.
Merge: Astro1 and Astro2 
Merge: Astro 3 and Astro 4
Astro5 remains distinct.


```{r}

Idents(seu.L) <- 'Level2'

cluster.ids <- c("Astrocytes1","Neurons1","RG1","Astrocytes1","Neurons2",
                 "Astrocytes2","Astrocytes2","Neurons3","RG2","Neurons4",
                 "Astrocytes3","Neurons5","RG3","DANeurons1","Neurons6",
                 "Mix","RG4","NPC","Neurons7","DANeurons2",
                 "DANeurons3","RG5","RG6","RG7","RG8"
                 )

# merge some astrocyte groups

names(cluster.ids) <- levels(seu.L)
seu.L <- RenameIdents(seu.L, cluster.ids)
seu.L$Cell_Subtypes <- Idents(seu.L)

DimPlot(seu.L, group.by = 'Cell_Subtypes')





```

Now look at the astrocyte subgroup group markers

```{r}

# Astro1 HPD
# Astro2 COL3A1
# Astro3 DCN

FeaturePlot(seu.L, features = c("HPD","COL3A1","DCN"))
FeaturePlot(seu.L, features = "DCN", split.by = 'Levels')
FeaturePlot(seu.L, features = "HPD", split.by = 'Levels')
FeaturePlot(seu.L, features = "COL3A1", split.by = 'Levels')

Idents(seu.L) <- 'Cell_Subtypes'
sub.astro <- subset(seu.L, idents = c("Astrocytes1","Astrocytes2","Astrocytes3"))
FeaturePlot(sub.astro, features = "DCN", split.by = 'Cell_Subtypes')
FeaturePlot(sub.astro, features = "HPD", split.by = 'Cell_Subtypes')
FeaturePlot(sub.astro, features = "COL3A1", split.by = 'Cell_Subtypes')

# these markers are okay but not ideal - more of an enrichment

DotPlot(sub.astro, features = c("HPD","COL3A1","DCN"), group.by = 'Cell_Subtypes') + RotatedAxis()
DotPlot(seu.L, features = c("HPD","COL3A1","DCN"), group.by = 'Cell_Subtypes') + RotatedAxis()


```

Double check for other markers

```{r}
Idents(sub.astro) <- 'Cell_Subtypes'
astro.markers <- FindAllMarkers(sub.astro, logfc.threshold = 0.5, only.pos = TRUE, test.use = "MAST")

```

Plot possible markers

```{r}

genes <- (astro.markers %>% filter(cluster == "Astrocytes1"))$gene

DotPlot(sub.astro, features = genes) +RotatedAxis()
DimPlot(sub.astro)
FeaturePlot(sub.astro, features = genes)

# HPD is best

genes <- (astro.markers %>% filter(cluster == "Astrocytes2" & avg_log2FC > 1))$gene
length(genes)

DotPlot(sub.astro, features = genes) +RotatedAxis()
DotPlot(seu.L, features = genes, group.by = 'Cell_Subtypes') +RotatedAxis()
DimPlot(sub.astro)
FeaturePlot(sub.astro, features = genes)

# RG8 is super high in all the Astro2 markers

genes <- (astro.markers %>% filter(cluster == "Astrocytes3" & avg_log2FC > 1))$gene
length(genes)

DotPlot(sub.astro, features = genes) +RotatedAxis()
DotPlot(seu.L, features = genes, group.by = 'Cell_Subtypes') +RotatedAxis()
DimPlot(sub.astro)
FeaturePlot(sub.astro, features = genes)
# by feature plot FABP5 and IFITM3 seem better markers for Astro3
# Ill switch to FABP5 

```

Label with the subtype markers

```{r}
Idents(seu.L) <- 'Level3'

cluster.ids <- c("Astrocytes-HPD","Neurons1","RG1","Astrocytes-HPD","Neurons2",
                 "Astrocytes-COL3A1","Astrocytes-COL3A1","Neurons3","RG2","Neurons4",
                 "Astrocytes-FABP5","Neurons5","RG3","DANeurons1","Neurons6",
                 "Mix","RG4","NPC","Neurons7","DANeurons2",
                 "DANeurons3","RG5","RG6","RG7","RG8"
                 )

names(cluster.ids) <- levels(seu.L)
seu.L <- RenameIdents(seu.L, cluster.ids)
seu.L$Cell_Subtype_Markers <- Idents(seu.L)

DimPlot(seu.L, group.by = 'Cell_Subtype_Markers')

```

Check neuron subgroup markers and annotate

```{r}

# subtype markers
# DA1,DA2,DA2,N1,N2,N3,N4,N5,N6,N7

n.markers <- c("RAB3B","TPBG","TTR","ASCL1","SPARCL1","GRIN2A","NEAT1","ID1","GRIA2","OTX2")

FeaturePlot(seu.L, features = n.markers )
DotPlot(seu.L, features = n.markers) + RotatedAxis()


Idents(seu.L) <- 'Cell_Subtypes'
sub.neur <- subset(seu.L, idents = c("DANeurons1","DANeurons2","DANeurons3",
                                     "Neurons1","Neurons2","Neurons3",
                                     "Neurons4","Neurons5","Neurons6","Neurons7"))
DotPlot(sub.neur, features = n.markers) + RotatedAxis()
FeaturePlot(sub.neur, features = n.markers )
DimPlot(sub.neur)

# seems DA neurons3 would be better marked by OTX2 more cells express - no not really
# doesn't seem a good marker of neurons 7 either
# DA neurons 2 would be better marked by ASCL1
# might find a better marker of neurons 1


FeaturePlot(sub.neur, features = "OTX2", split.by = 'Cell_Subtypes')
FeaturePlot(sub.neur, features = "ASCL1", split.by = 'Cell_Subtypes') # not a good marker Neurons1
FeaturePlot(sub.neur, features = "SPARCL1", split.by = 'Cell_Subtypes')

# maybe having the DA and neurons together is throughing things off
Idents(seu.L) <- 'Cell_Subtypes'
sub.da <- subset(seu.L, idents = c("DANeurons1","DANeurons2","DANeurons3"))
DotPlot(sub.da, features = n.markers) + RotatedAxis()
FeaturePlot(sub.da, features = n.markers)
DimPlot(sub.da)


Idents(seu.L) <- 'Cell_Subtypes'
sub.n <- subset(seu.L, idents = c("Neurons1","Neurons2","Neurons3",
                                  "Neurons4","Neurons5","Neurons6","Neurons7"))
DotPlot(sub.n, features = n.markers) + RotatedAxis()
FeaturePlot(sub.n, features = n.markers )
DimPlot(sub.n)


```


Repeat cluster markers

```{r}

neur.markers <- FindAllMarkers(sub.n, logfc.threshold = 0.5, only.pos = TRUE, test.use = "MAST")
da.markers <- FindAllMarkers(sub.da, logfc.threshold = 0.5, only.pos = TRUE, test.use = "MAST")
all.n.markers <- FindAllMarkers(sub.neur, logfc.threshold = 0.5, only.pos = TRUE, test.use = "MAST")

```

Look at the markers in all markers

```{r}
# neurons1
genes.n1 <- (all.n.markers %>% filter(cluster == "Neurons1" & avg_log2FC > 0.8))$gene
length(genes.n1)

DotPlot(sub.neur, features = genes.n1) + RotatedAxis()
DotPlot(sub.n, features = genes.n1) + RotatedAxis()
FeaturePlot(sub.n, features = genes.n1)
DimPlot(sub.n)

FeaturePlot(sub.n, features = "KCNQ1OT1", split.by = 'Cell_Subtypes')
FeaturePlot(sub.n, features = "ASCL1", split.by = 'Cell_Subtypes')

# neurons2
genes.n2 <- (all.n.markers %>% filter(cluster == "Neurons2" & avg_log2FC > 0.8))$gene
length(genes.n2)
genes.n2 <- genes.n2[14:40]
# select ones that look good
genes.n2 <- genes.n2[1:4]

DotPlot(sub.neur, features = genes.n2) + RotatedAxis()
DotPlot(sub.n, features = genes.n2) + RotatedAxis()
FeaturePlot(sub.n, features = genes.n2)
DimPlot(sub.n)

# neurons 3
genes.n3 <- (all.n.markers %>% filter(cluster == "Neurons3" & avg_log2FC > 0.8 & pct.1 > 0.5))$gene
length(genes.n3)


DotPlot(sub.neur, features = genes.n3) + RotatedAxis()
DotPlot(sub.n, features = genes.n3) + RotatedAxis()
FeaturePlot(sub.n, features = genes.n3)
DimPlot(sub.n)

FeaturePlot(sub.n, features = "TFPI2", split.by = 'Cell_Subtypes')

# neurons 4

# like 2 a lot of MT genes
genes.n4 <- (all.n.markers %>% filter(cluster == "Neurons4" & p_val_adj < 0.05 & avg_log2FC > 0.8))$gene
length(genes.n4)
genes.n4 <- genes.n4[7:20]

# none of the marker for 4 look any good

sub.n2 <- subset(sub.n, idents = c("Neurons2","Neurons4","Neurons6"))

DimPlot(sub.n2)
DotPlot(sub.n2, features = genes.n4) + RotatedAxis()
DotPlot(sub.n, features = genes.n4) + RotatedAxis()
FeaturePlot(sub.n, features = genes.n3)
DimPlot(sub.n)

# many markers are different between 2,4,6 but not as clear when all neurons are included
# CP, IGFBP7, ZFP36L1 
FeaturePlot(sub.n2, features = "CP", split.by = 'Cell_Subtypes') # good
FeaturePlot(sub.n2, features = "IGFBP7", split.by = 'Cell_Subtypes')  # too much in N2
FeaturePlot(sub.n2, features = "ZFP36L1", split.by = 'Cell_Subtypes')

# neurons 5
genes.n5 <- (all.n.markers %>% filter(cluster == "Neurons5" & p_val_adj < 0.5 
                                      & avg_log2FC > 1))$gene
length(genes.n5)
# & pct.1 > 0.5

DotPlot(sub.neur, features = genes.n5) + RotatedAxis()
DotPlot(sub.n, features = genes.n5) + RotatedAxis()
FeaturePlot(sub.n, features = genes.n5)
DimPlot(sub.n)
FeaturePlot(sub.n, features = "TPBG", split.by = 'Cell_Subtypes') # also in Neur1
FeaturePlot(sub.n, features = "MGP", split.by = 'Cell_Subtypes') # pretty good
# choose MGP

# neurons 6
genes.n6 <- (all.n.markers %>% filter(cluster == "Neurons6" & p_val_adj < 0.05 & avg_log2FC > 0.8))$gene
length(genes.n6)
genes.n6
# top genes all MT 
# none MT genes in top:
genes.n6 <- c("GRIA2", "DCLK1","SYT1", "NRN1" )
# all these markers are good to distinguish the 3 close cell types
# GRIA1 is best to distinguish from all

DimPlot(sub.n2)
DotPlot(sub.n2, features = genes.n6) + RotatedAxis()
DotPlot(sub.n, features = genes.n6) + RotatedAxis()
FeaturePlot(sub.n2, features = genes.n6)
FeaturePlot(sub.n2, features = genes.n6, split.by = "Cell_Subtypes")

# neurons 7

genes.n7 <- (all.n.markers %>% filter(cluster == "Neurons7" & p_val_adj < 0.5 
                                      & avg_log2FC > 1))$gene
length(genes.n7)
genes.n7

DotPlot(sub.neur, features = genes.n7) + RotatedAxis()
DotPlot(sub.n, features = genes.n7) + RotatedAxis()
FeaturePlot(sub.n, features = genes.n5)
DimPlot(sub.n)

# very overlapping with DAN3
# all markers good verses the other the other neurons

# STMN1 could be good but it also in Neurons1 and 6
FeaturePlot(sub.n, features = "STMN1", split.by = 'Cell_Subtypes')
FeaturePlot(sub.n, features = genes.n7[1], split.by = 'Cell_Subtypes') # TPH1 best choice


```

Rename the neurons with Subtype markers

```{r}
Idents(seu.L) <- 'Level3'

cluster.ids <- c("Astrocytes-HPD","Neurons-ASCL1","RG1","Astrocytes-HPD","Neurons-SPARCL1",
                 "Astrocytes-COL3A1","Astrocytes-COL3A1","Neurons-TFPI1","RG2","Neurons-CP",
                 "Astrocytes-FABP5","Neurons-MGP","RG3","DANeurons-RAB3B","Neurons-GRIA2",
                 "Mix","RG4","NPC","Neurons-TPH1","DANeurons-TPBG",
                 "DANeurons-TTR","RG5","RG6","RG7","RG8"
                 )

names(cluster.ids) <- levels(seu.L)
seu.L <- RenameIdents(seu.L, cluster.ids)
seu.L$Cell_Subtype_Markers <- Idents(seu.L)

DimPlot(seu.L, group.by = 'Cell_Subtype_Markers', label = TRUE)

```

Now get subtype markers for RG

RG1 - ventral (doesn't have positive markers)
RG2 - 



```{r}

# have a look at the top potential markers 
# RG1,RG2,RG3,RG4,RG5,RG6,RG7,RG8
# note RG1 is SOX2-

rg <- c("SOX2","CRYAB","DDX17","PTPRZ1","DLK1","EMX2","TOP2A","VCAN")

DotPlot(seu.L, features = rg) + RotatedAxis()

# I think they look pretty good except 5 and 6 
# check in subset

sub.rg <- subset(seu.L, idents = c("RG1","RG2","RG3","RG4","RG5","RG6","RG7","RG8"))
DotPlot(sub.rg, features = rg) + RotatedAxis()

# CRYAB is not great look for a better marker for 2
# could find better than PTPRZ1 for 4
# RG6,7,8 sll look good by dot plot

FeaturePlot(sub.rg, features = rg[2], split.by = 'Cell_Subtypes') # CRYAB still not great
# see markers that look good by dotplot
FeaturePlot(sub.rg, features = rg[6], split.by = 'Cell_Subtypes') # EMX2 - okay
FeaturePlot(sub.rg, features = rg[7], split.by = 'Cell_Subtypes') # TOP2A - very good
FeaturePlot(sub.rg, features = rg[8], split.by = 'Cell_Subtypes') # EMX2 - very good



```

Merge 2 and 4 then get markers again
After merging 2 and 4 the new 4 previously 5 also seems the same

```{r}

Idents(seu.L) <- 'Level3'
DimPlot(seu.L)

cluster.ids <- c("Astrocytes1","Neurons1","RadialGlia1","Astrocytes1","Neurons2",
                 "Astrocytes2","Astrocytes2","Neurons3","RadialGlia2","Neurons4",
                 "Astrocytes3","Neurons5","RadialGlia3","DANeurons1","Neurons6",
                 "Mix","RadialGlia2","NPC","Neurons7","DANeurons2",
                 "DANeurons3","RadialGlia2","RadialGlia4","RadialGlia5","RadialGlia6"
                 )

# merge RG2 and 4
# new = previous
# RG1 = "RadialGlia1
# RG2 = RG2
# RG3 = RG3
# RG 4 = RG5
# RG 5 = RG6
# RG6 = RG7
# RG7=RG8

# merge 2 4 and 5

names(cluster.ids) <- levels(seu.L)
seu.L <- RenameIdents(seu.L, cluster.ids)
seu.L$Cell_Subtypes <- Idents(seu.L)

DimPlot(seu.L, group.by = 'Cell_Subtypes')

```

```{r}

Idents(seu.L) <- 'Cell_Subtypes'
sub.rg <- subset(seu.L, idents = c("RadialGlia1","RadialGlia2","RadialGlia3","RadialGlia4",
                                   "RadialGlia5","RadialGlia6","RadialGlia7"))
#subset again after merging original 5 with 2 and 4
sub.rg <- subset(seu.L, idents = c("RadialGlia1","RadialGlia2","RadialGlia3","RadialGlia4",
                                   "RadialGlia5","RadialGlia6"))


DotPlot(sub.rg, features = rg) + RotatedAxis()

```


Calculate new markers

```{r}

rg.markers <- FindAllMarkers(sub.rg, logfc.threshold = 0.5, only.pos = TRUE, test.use = "MAST")

```

Look at the markers

```{r}

# check again RG1
genes.rg1 <- (rg.markers %>% filter(cluster == "RadialGlia1" & pct.1 > pct.2 ))$gene
#& avg_log2FC > 1
length(genes.rg1)
genes.rg1

DotPlot(sub.rg, features = genes.rg1) + RotatedAxis()

genes.rg2 <- (rg.markers %>% filter(cluster == "RadialGlia2" & avg_log2FC > 1))$gene
length(genes.rg2)
genes.rg2
DimPlot(sub.rg)

# 2 and 4 seem the same also

DotPlot(sub.rg, features = genes.rg2) + RotatedAxis()
# new RG2 markers
# SPARCL1, ATP1A2,PNT, PRPRZ1 

# the mitochondrial markers re up in 4 (current 4)
FeaturePlot(sub.rg, features = genes.rg2[1], split.by = 'Cell_Subtypes') # SPARCL1 okay
FeaturePlot(sub.rg, features = genes.rg2[2], split.by = 'Cell_Subtypes') # ATP1A2  not in top area
DimPlot(sub.rg, group.by = "Cell_Subtypes")

FeaturePlot(sub.rg, features = genes.rg2[1:4])
# looking at feature plot I think PTN might be the better marker for RG2


### RG3
genes.rg3 <- (rg.markers %>% filter(cluster == "RadialGlia3" & avg_log2FC > 1.5))$gene
length(genes.rg3)
genes.rg3
DimPlot(sub.rg)
DotPlot(sub.rg, features = genes.rg3) + RotatedAxis()
FeaturePlot(sub.rg, features = genes.rg3)
FeaturePlot(sub.rg, features = genes.rg3[1], split.by = 'Cell_Subtypes')  # NEAT1 pretty good
FeaturePlot(sub.rg, features = genes.rg3[2], split.by = 'Cell_Subtypes')  # DDX17 also pretty good 
# both are also expressed in RG1 and RG2
FeaturePlot(sub.rg, features = genes.rg3[3], split.by = 'Cell_Subtypes') # ZMAT

# ran without the pct.1 filter and log2FC > 1.5 get different top genes  NEAT and DDX17 are still top 2
# try ZMAT - not as good
FeaturePlot(sub.rg, features = genes.rg3[3], split.by = 'Cell_Subtypes')


# RG4
genes.rg4 <- (rg.markers %>% filter(cluster == "RadialGlia4" & avg_log2FC > 1.5))$gene
length(genes.rg4)
genes.rg4
genes.rg4 <- genes.rg4[16:30]
DimPlot(sub.rg)
DotPlot(sub.rg, features = genes.rg4) + RotatedAxis()

FeaturePlot(sub.rg, features = "EMX2", split.by = 'Cell_Subtypes')
FeaturePlot(sub.rg, features = "CP", split.by = 'Cell_Subtypes')
FeaturePlot(sub.rg, features = "CYP1B1", split.by = 'Cell_Subtypes')
FeaturePlot(sub.rg, features = "WIF1", split.by = 'Cell_Subtypes')

# all markers work well by dotplot

# RG4
genes.rg4 <- (rg.markers %>% filter(cluster == "RadialGlia4" & avg_log2FC > 1.5))$gene
length(genes.rg4)
genes.rg4

```

Check markers

```{r}

# remember RG1 has no markers
rg <- c("RPL41","PTN","NEAT1","CYP1B1","TOP2A","VCAN")
DotPlot(sub.rg, features = rg) + RotatedAxis()
DotPlot(seu.L, features = rg) + RotatedAxis()


```


Add the RG cell subtype markers

Remember 2,4 and 5 are merged

```{r}
Idents(seu.L) <- 'Level3'

cluster.ids <- c("Astrocytes-HPD","Neurons-ASCL1","RadialGlia-RPL41","Astrocytes-HPD",
                 "Neurons-SPARCL1","Astrocytes-COL3A1","Astrocytes-COL3A1",
                 "Neurons-TFPI1","RadialGlia-PTN","Neurons-CP",
                 "Astrocytes-FABP5","Neurons-MGP","RadialGlia-NEAT1","DANeurons-RAB3B",
                 "Neurons-GRIA2",
                 "Mix","RadialGlia-PTN","NPC","Neurons-TPH1","DANeurons-TPBG",
                 "DANeurons-TTR","RadialGlia-PTN","RadialGlia-CY1B1",
                 "RadialGlia-TOP2A","RadialGlia-VCAN"
                 )

names(cluster.ids) <- levels(seu.L)
seu.L <- RenameIdents(seu.L, cluster.ids)
seu.L$Cell_Subtype_Markers <- Idents(seu.L)

DimPlot(seu.L, group.by = 'Cell_Subtype_Markers', label = TRUE, repel = TRUE)
DimPlot(seu.L, group.by = 'Cell_Subtype_Markers')



```

Save the new data object

```{r}

saveRDS(seu.L, paste(pathway, "CombinedLabeledMarkers14102022.RDS"))


```


Clean up labels

```{r}

colnames(seu.L@meta.data)
print("Cell_Subtype_Markers")
unique(seu.L$Cell_Subtype_Markers)
print("Cell_Subtypes")
unique(seu.L$Cell_Subtypes)
print("Cell_Types")
unique(seu.L$Cell_Types)





```


```{r}

meta <- colnames(seu.L@meta.data)

meta.to.remove <- c("Level3", "Levels", "Level2")


for(i in meta.to.remove) {
  seu.L[[i]] <- NULL
}

colnames(seu.L@meta.data)

```








